van Hijum, S. : rechercher sur Z-Library

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1

Financing public water management: Dealing with economic costs of water use

Journal:

Water Science and Technology

Année:

1998

Langue:

english

Fichier:

PDF, 705 KB

english, 1998

2

Structure-Function Relationships of Glucansucrase and Fructansucrase Enzymes from Lactic Acid Bacteria

Kralj, S., Ozimek, L. K., van Hijum, S. A. F. T., Dijkhuizen, L., van Geel-Schutten, I. G. H.

Journal:

Microbiology and Molecular Biology Reviews

Année:

2006

Langue:

english

Fichier:

PDF, 620 KB

english, 2006

3

Microbiome dynamics of human epidermis following skin barrier disruption

Patrick LJM Zeeuwen, Jos Boekhorst, Ellen H van den Bogaard, Heleen D de Koning, Peter MC van de Kerkhof, Delphine M Saulnier, Iris I van Swam, Sacha AFT van Hijum, Michiel Kleerebezem, Joost Schalkwi

Journal:

Année:

2012

Langue:

english

Fichier:

PDF, 1.37 MB

english, 2012

4

PanCGHweb: a web tool for genotype calling in pangenome CGH data

Bayjanov, J. R., Siezen, R. J., van Hijum, S. A. F. T.

Journal:

Année:

2010

Langue:

english

Fichier:

PDF, 132 KB

english, 2010

5

Discussions and Closure: Incipient Motion of Coarse Particles on a Slope by Regular or Irregular Waves

Tomasicchio, Giuseppe R., van der Meer, J. W., van Hijum, E., Ünal, N. Erdem, Bayazit, M.

Journal:

Journal of Waterway Port Coastal and Ocean Engineering

Année:

1999

Langue:

english

Fichier:

PDF, 66 KB

english, 1999

6

Correction for Quainoo et al., “Whole-Genome Sequencing of Bacterial Pathogens: the Future of Nosocomial Outbreak Analysis”

Quainoo, Scott, Coolen, Jordy P. M., van Hijum, Sacha A. F. T., Huynen, Martijn A., Melchers, Willem J. G., van Schaik, Willem, Wertheim, Heiman F. L.

Journal:

Clinical Microbiology Reviews

Année:

2018

Langue:

english

Fichier:

PDF, 97 KB

english, 2018

7

214 TARgeting the cutaneous microbiota in atopic dermatitis by coal tar via AHR-dependent induction of antimicrobial peptides

Smits, J., Ederveen, T., Rikken, G., van den Brink, N., van Vlijmen-Willems, I., Boekhorst, J., Kamsteeg, M., Schalkwijk, J., van Hijum, S., Zeeuwen, P., van den Bogaard, E.

Journal:

The Journal of Investigative Dermatology

Année:

2019

Langue:

english

Fichier:

PDF, 192 KB

english, 2019

8

Comparative and functional genomics of lactococci

Jan Kok, Girbe Buist, Aldert L. Zomer, Sacha A.F.T. Van Hijum, Oscar P. Kuipers

Journal:

FEMS Microbiology Reviews

Année:

2005

Langue:

english

Fichier:

PDF, 540 KB

english, 2005

9

Characterization of the global impact of low temperature gas plasma on vegetative microorganisms

Theresa Winter, Jörn Winter, Martin Polak, Kathrin Kusch, Ulrike Mäder, Rabea Sietmann, Jörg Ehlbeck, Sacha van Hijum, Klaus-Dieter Weltmann, Michael Hecker, Harald Kusch

Journal:

Année:

2011

Langue:

english

Fichier:

PDF, 506 KB

english, 2011

10

Visualizing Genome Expression and Regulatory Network Dynamics in Genomic and Metabolic Context

M. A. Westenberg, S. A. F. T. Van Hijum, O. P. Kuipers, J. B. T. M. Roerdink

Journal:

Computer Graphics Forum

Année:

2008

Langue:

english

Fichier:

PDF, 432 KB

english, 2008

11

Comparison of Multiple Weighted Hierarchies: Visual Analytics for Microbe Community Profiling

K. Dinkla, M.A. Westenberg, H.M. Timmerman, S.A.F.T. van Hijum, J.J. van Wijk

Journal:

Computer Graphics Forum

Année:

2011

Langue:

english

Fichier:

PDF, 2.50 MB

english, 2011

12

Purification of a novel fructosyltransferase from Lactobacillus reuteri strain 121 and characterization of the levan produced

Sacha A.F.T. van Hijum, Kees Bonting, Marc J.E.C. van der Maarel, Lubbert Dijkhuizen

Journal:

FEMS Microbiology Letters

Année:

2001

Langue:

english

Fichier:

PDF, 209 KB

english, 2001

13

Fractional Factorial Design for Optimization of the SELDI Protocol for Human Adipose Tissue Culture Media

Ewa Szalowska, Sacha A.F.T. Van Hijum, Han Roelofsen, Annemiek Hoek, Roel J. Vonk, Gerard J. te Meerman

Journal:

Biotechnology Progress

Année:

2007

Langue:

english

Fichier:

PDF, 254 KB

english, 2007

14

Transcriptome analysis and related databases ofLactococcus lactis

Oscar P. Kuipers, Anne de Jong, Richard J. S. Baerends, Sacha A. F. T. van Hijum, Aldert L. Zomer, Harma A. Karsens, Chris D. den Hengst, Naomi E. Kramer, Girbe Buist, Jan Kok

Journal:

Antonie van Leeuwenhoek

Année:

2002

Langue:

english

Fichier:

PDF, 608 KB

english, 2002

15

Data mining in the Life Sciences with Random Forest: a walk in the park or lost in the jungle?

Touw, W. G., Bayjanov, J. R., Overmars, L., Backus, L., Boekhorst, J., Wels, M., van Hijum, S. A. F. T.

Journal:

Briefings in Bioinformatics

Année:

2012

Langue:

english

Fichier:

PDF, 409 KB

english, 2012

16

Comparative and functional genomics of lactococci

Jan Kok, Girbe Buist, Aldert L. Zomer, Sacha A.F.T. van Hijum, Oscar P. Kuipers

Journal:

FEMS Microbiology Reviews

Année:

2005

Langue:

english

Fichier:

PDF, 540 KB

english, 2005

17

Genome (re-)annotation and open-source annotation pipelines

Roland J. Siezen, Sacha A. F. T. Van Hijum

Journal:

Microbial Biotechnology

Année:

2010

Langue:

english

Fichier:

PDF, 563 KB

english, 2010

18

Genome-scale diversity and niche adaptation analysis of Lactococcus lactis by comparative genome hybridization using multi-strain arrays

Roland J. Siezen, Jumamurat R. Bayjanov, Giovanna E. Felis, Marijke R. van der Sijde, Marjo Starrenburg, Douwe Molenaar, Michiel Wels, Sacha A. F. T. van Hijum, Johan E. T. van Hylckama Vlieg

Journal:

Microbial Biotechnology

Année:

2011

Langue:

english

Fichier:

PDF, 843 KB

english, 2011

19

SIMAGE:simulation of DNA-microarraygeneexpression data

Casper J Albers, Ritsert C Jansen, Jan Kok, Oscar P Kuipers, Sacha AFT van Hijum

Journal:

BMC Bioinformatics

Année:

2006

Langue:

english

Fichier:

PDF, 1.06 MB

english, 2006

20

DISCLOSE : DISsection of CLusters Obtained by SEries of transcriptome data using functional annotations and putative transcription factor binding sites

Evert-Jan Blom, Sacha AFT van Hijum, Klaas J Hofstede, Remko Silvis, Jos BTM Roerdink, Oscar P Kuipers

Journal:

BMC Bioinformatics

Année:

2008

Langue:

english

Fichier:

PDF, 1.45 MB

english, 2008

21

Supervised Lowess normalization of comparative genome hybridization data – application to lactococcal strain comparisons

Sacha AFT van Hijum, Richard JS Baerends, Aldert L Zomer, Harma A Karsens, Victoria Martin-Requena, Oswaldo Trelles, Jan Kok, Oscar P Kuipers

Journal:

BMC Bioinformatics

Année:

2008

Langue:

english

Fichier:

PDF, 753 KB

english, 2008

22

A predicted physicochemically distinct sub-proteome associated with the intracellular organelle of the anammox bacteriumKuenenia stuttgartiensis

Marnix H Medema, Miaomiao Zhou, Sacha AFT van Hijum, Jolein Gloerich, Hans JCT Wessels, Roland J Siezen, Marc Strous

Journal:

Année:

2010

Langue:

english

Fichier:

PDF, 1.14 MB

english, 2010

23

A generally applicable validation scheme for the assessment of factors involved in reproducibility and quality of DNA-microarray data

Sacha AFT van Hijum, Anne de Jong, Richard JS Baerends, Harma A Karsens, Naomi E Kramer, Rasmus Larsen, Chris D den Hengst, Casper J Albers, Jan Kok, Oscar P Kuipers

Journal:

Année:

2005

Langue:

english

Fichier:

PDF, 1.18 MB

english, 2005

24

Prosecutor: parameter-free inference of gene function for prokaryotes using DNA microarray data, genomic context and multiple gene annotation sources

Evert Jan Blom, Rainer Breitling, Klaas Jan Hofstede, Jos BTM Roerdink, Sacha AFT van Hijum, Oscar P Kuipers

Journal:

Année:

2008

Langue:

english

Fichier:

PDF, 1.52 MB

english, 2008

25

Kinetic properties of an inulosucrase from Lactobacillus reuteri 121

S.A.F.T van Hijum, M.J.E.C van der Maarel, L Dijkhuizen

Journal:

Année:

2003

Langue:

english

Fichier:

PDF, 127 KB

english, 2003

26

Site-directed mutagenesis study of the three catalytic residues of the fructosyltransferases of Lactobacillus reuteri 121

L.K Ozimek, S.A.F.T van Hijum, G.A van Koningsveld, M.J.E.C van der Maarel, G.H van Geel-Schutten, L Dijkhuizen

Journal:

Année:

2004

Langue:

english

Fichier:

PDF, 91 KB

english, 2004

27

Purification of a novel fructosyltransferase from Lactobacillus reuteri strain 121 and characterization of the levan produced

Sacha A.F.T. van Hijum, Kees Bonting, Marc J.E.C. van der Maarel, Lubbert Dijkhuizen

Journal:

FEMS Microbiology Letters

Année:

2001

Langue:

english

Fichier:

PDF, 212 KB

english, 2001

28

PhenoLink - a web-tool for linking phenotype to ~omics data for bacteria: application to gene-trait matching forLactobacillus plantarumstrains

Bayjanov, Jumamurat R, Molenaar, Douwe, Tzeneva, Vesela, Siezen, Roland J, van Hijum, Sacha A F T

Journal:

Année:

2012

Langue:

english

Fichier:

PDF, 296 KB

english, 2012

29

On the response of a poro-elastic bed to water waves

Yamamoto, Tokuo, Koning, H. L., Sellmeijer, Hans, Hijum, Ep Van

Journal:

Journal of Fluid Mechanics

Année:

1978

Langue:

english

Fichier:

PDF, 252 KB

english, 1978

30

Differences in sequencing technologies improve the retrieval of anammox bacterial genome from metagenomes

Gori, Fabio, Tringe, Susannah G, Folino, Gianluigi, van Hijum, Sacha AFT, Op den Camp, Huub JM, Jetten, Mike SM, Marchiori, Elena

Journal:

Année:

2013

Langue:

english

Fichier:

PDF, 1.04 MB

english, 2013

31

Multifactorial diversity sustains microbial community stability

Erkus, Oylum, de Jager, Victor CL, Spus, Maciej, van Alen-Boerrigter, Ingrid J, van Rijswijck, Irma MH, Hazelwood, Lucie, Janssen, Patrick WM, van Hijum, Sacha AFT, Kleerebezem, Michiel, Smid, Eddy J

Journal:

The ISME Journal

Année:

2013

Langue:

english

Fichier:

PDF, 2.09 MB

english, 2013

32

A novel scheme to assess factors involved in the reproducibility of DNA-microarray data

Sacha AFT van Hijum, Anne de Jong, Richard JS Baerends, Harma A Karsens…

Journal:

Année:

2005

Langue:

english

Fichier:

PDF, 750 KB

english, 2005

33

Application of state-of-art sequencing technologies to indigenous food fermentations

van Hijum, Sacha AFT, Vaughan, Elaine E, Vogel, Rudi F

Journal:

Current Opinion in Biotechnology

Année:

2013

Langue:

english

Fichier:

PDF, 1.31 MB

english, 2013

34

Screening metatranscriptomes for toxin genes as functional drivers of human colorectal cancer

Dutilh, Bas E., Backus, Lennart, van Hijum, Sacha A.F.T., Tjalsma, Harold

Journal:

Best Practice & Research Clinical Gastroenterology

Année:

2013

Langue:

english

Fichier:

PDF, 937 KB

english, 2013

35

Effect of growth rate and selection pressure on rates of transfer of an antibiotic resistance plasmid between E. coli strains

Schuurmans, Jasper M., van Hijum, Sacha A.F.T., Piet, Jurgen R., Händel, Nadine, Smelt, Jan, Brul, Stanley, ter Kuile, Benno H.

Journal:

Année:

2014

Langue:

english

Fichier:

PDF, 897 KB

english, 2014

36

Characterization of a Novel Fructosyltransferase from Lactobacillus reuteri That Synthesizes High-Molecular-Weight Inulin and Inulin Oligosaccharides

van Hijum, S. A. F. T., van Geel-Schutten, G. H., Rahaoui, H., van der Maarel, M. J. E. C., Dijkhuizen, L.

Journal:

Applied and Environmental Microbiology

Année:

2002

Langue:

english

Fichier:

PDF, 273 KB

english, 2002

37

Mixed-Culture Transcriptome Analysis Reveals the Molecular Basis of Mixed-Culture Growth in Streptococcus thermophilus and Lactobacillus bulgaricus

Sieuwerts, S., Molenaar, D., van Hijum, S. A. F. T., Beerthuyzen, M., Stevens, M. J. A., Janssen, P. W. M., Ingham, C. J., de Bok, F. A. M., de Vos, W. M., van Hylckama Vlieg, J. E. T.

Journal:

Applied and Environmental Microbiology

Année:

2010

Langue:

english

Fichier:

PDF, 375 KB

english, 2010

38

Degenerate target sites mediate rapid primed CRISPR adaptation

Fineran, P. C., Gerritzen, M. J. H., Suarez-Diez, M., Kunne, T., Boekhorst, J., van Hijum, S. A. F. T., Staals, R. H. J., Brouns, S. J. J.

Journal:

Proceedings of the National Academy of Sciences

Année:

2014

Langue:

english

Fichier:

PDF, 2.14 MB

english, 2014

39

FACIL: Fast and Accurate Genetic Code Inference and Logo

Dutilh, B. E., Jurgelenaite, R., Szklarczyk, R., van Hijum, S. A. F. T., Harhangi, H. R., Schmid, M., de Wild, B., Francoijs, K.-J., Stunnenberg, H. G., Strous, M., Jetten, M. S. M., Op den Camp, H. J

Journal:

Année:

2011

Langue:

english

Fichier:

PDF, 515 KB

english, 2011

40

Regulation of Glutamine and Glutamate Metabolism by GlnR and GlnA in Streptococcus pneumoniae

Kloosterman, T. G., Hendriksen, W. T., Bijlsma, J. J. E., Bootsma, H. J., van Hijum, S. A. F. T., Kok, J., Hermans, P. W. M., Kuipers, O. P.

Journal:

Journal of Biological Chemistry

Année:

2006

Langue:

english

Fichier:

PDF, 1.22 MB

english, 2006

41

Genotypic adaptations associated with prolonged persistence of Lactobacillus plantarum in the murine digestive tract

van Bokhorst-van de Veen, Hermien, Smelt, Maaike J., Wels, Michiel, van Hijum, Sacha A. F. T., de Vos, Paul, Kleerebezem, Michiel, Bron, Peter A.

Journal:

Biotechnology Journal

Année:

2013

Langue:

english

Fichier:

PDF, 355 KB

english, 2013

42

Diversity in Robustness of Lactococcus lactis Strains during Heat Stress, Oxidative Stress, and Spray Drying Stress

Dijkstra, A. R., Setyawati, M. C., Bayjanov, J. R., Alkema, W., van Hijum, S. A. F. T., Bron, P. A., Hugenholtz, J.

Journal:

Applied and Environmental Microbiology

Année:

2014

Langue:

english

Fichier:

PDF, 720 KB

english, 2014

43

Complete Genome of Lactococcus lactis subsp. cremoris UC509.9, Host for a Model Lactococcal P335 Bacteriophage

Ainsworth, S., Zomer, A., de Jager, V., Bottacini, F., van Hijum, S. A. F. T., Mahony, J., van Sinderen, D.

Journal:

Genome Announcements

Année:

2013

Langue:

english

Fichier:

PDF, 132 KB

english, 2013

44

The Raw Starch Binding Domain of Cyclodextrin Glycosyltransferase from Bacillus circulans Strain 251

Penninga, D., van der Veen, B. A., Knegtel, R. M. A., van Hijum, S. A. F. T., Rozeboom, H. J., Kalk, K. H., Dijkstra, B. W., Dijkhuizen, L.

Journal:

Journal of Biological Chemistry

Année:

1996

Langue:

english

Fichier:

PDF, 916 KB

english, 1996

45

Fermentation-induced variation in heat and oxidative stress phenotypes ofLactococcus lactisMG1363 reveals transcriptome signatures for robustness

Dijkstra, Annereinou R, Alkema, Wynand, Starrenburg, Marjo JC, Hugenholtz, Jeroen, van Hijum, Sacha AFT, Bron, Peter A

Journal:

Microbial Cell Factories

Année:

2014

Langue:

english

Fichier:

PDF, 533 KB

english, 2014

46

Defining the structure of the general stress regulon of Bacillus subtilis using targeted microarray analysis and random forest classification

Nannapaneni, P., Hertwig, F., Depke, M., Hecker, M., Mader, U., Volker, U., Steil, L., van Hijum, S. A. F. T.

Journal:

Microbiology (Society for General Microbiology)

Année:

2012

Langue:

english

Fichier:

PDF, 587 KB

english, 2012

47

Transcriptome Analysis Reveals Mechanisms by Which Lactococcus lactis Acquires Nisin Resistance

Kramer, N. E., van Hijum, S. A. F. T., Knol, J., Kok, J., Kuipers, O. P.

Journal:

Antimicrobial Agents and Chemotherapy

Année:

2006

Langue:

english

Fichier:

PDF, 147 KB

english, 2006

48

Genome Analysis of Moraxella catarrhalis Strain RH4, a Human Respiratory Tract Pathogen

de Vries, S. P. W., van Hijum, S. A. F. T., Schueler, W., Riesbeck, K., Hays, J. P., Hermans, P. W. M., Bootsma, H. J.

Journal:

Journal of Bacteriology

Année:

2012

Langue:

english

Fichier:

PDF, 62 KB

english, 2012

49

Transcriptome Analysis of the Lactococcus lactis ArgR and AhrC Regulons

Larsen, R., van Hijum, S. A. F. T., Martinussen, J., Kuipers, O. P., Kok, J.

Journal:

Applied and Environmental Microbiology

Année:

2008

Langue:

english

Fichier:

PDF, 359 KB

english, 2008

50

The Lactococcus lactis CodY Regulon: IDENTIFICATION OF A CONSERVED cis-REGULATORY ELEMENT

den Hengst, C. D., van Hijum, S. A. F. T., Geurts, J. M. W., Nauta, A., Kok, J., Kuipers, O. P.

Journal:

Journal of Biological Chemistry

Année:

2005

Langue:

english

Fichier:

PDF, 1.02 MB

english, 2005